2017
  1. Yamazaki T, Ichihara K, Suzuki R, Oshima K, Miyamura S, Kuwano K, Toyoda A, Suzuki Y, Sugano S, Hattori M, Kawano S. Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita. Sci Rep. 2017 7:11679. doi: 10.1038/s41598-017-11677-0.
  2. Zhang H, Kiuchi T, Wang L, Kawamoto M, Suzuki Y, Sugano S, Banno Y, Katsuma S, Shimada T. Bm-muted, orthologous to mouse muted and encoding a subunit of the BLOC-1 complex, is responsible for the otm translucent mutation of the silkworm Bombyx mori. Gene. 2017 629:92-100. doi: 10.1016/j.gene.2017.07.071.
  3. Yamagishi J, Runtuwene LR, Hayashida K, Mongan AE, Thi LAN, Thuy LN, Nhat CN, Limkittikul K, Sirivichayakul C, Sathirapongsasuti N, Frith M, Makalowski W, Eshita Y, Sugano S, Suzuki Y. Serotyping dengue virus with isothermal amplification and a portable sequencer. Sci Rep. 2017 7:3510. doi: 10.1038/s41598-017-03734-5.
  4. Fujita T, Kitaura F, Yuno M, Suzuki Y, Sugano S, Fujii H. Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line. DNA Res. 2017 Jun 6. doi: 10.1093/dnares/dsx023. [Epub ahead of print]
  5. Fujita T, Yuno M, Suzuki Y, Sugano S, Fujii H. Identification of physical interactions between genomic regions by enChIP-Seq. Genes Cells. 2017 22:506-520. doi: 10.1111/gtc.12492.
  6. Zhang Y, Matsuzaka T, Yano H, Furuta Y, Nakano T, Ishikawa K, Fukuyo M, Takahashi N, Suzuki Y, Sugano S, Ide H, Kobayashi I. Restriction glycosylases: involvement of endonuclease activities in the restriction process. Nucleic Acids Res. 2017 45:1392-1403. doi: 10.1093/nar/gkw1250.
  7. Tsuboi M, Watanabe M, Nibe K, Yoshimi N, Kato A, Sakaguchi M, Yamato O, Tanaka M, Kuwamura M, Kushida K, Ishikura T, Harada T, Chambers JK, Sugano S, Uchida K, Nakayama H. Identification of the PLA2G6 c.1579G>A Missense Mutation in Papillon Dog Neuroaxonal Dystrophy Using Whole Exome Sequencing Analysis. PLoS One. 2017 12:e0169002. doi: 10.1371/journal.pone.0169002. eCollection 2017.
  8. Sekimoto N, Suzuki A, Suzuki Y, Sugano S. Expression of miR?26a exhibits a negative correlation with HMGA1 and regulates cancer progression by targeting HMGA1 in lung adenocarcinoma cells. Mol Med Rep. 2017 15:534-542. doi: 10.3892/mmr.2016.6053. Epub 2016 Dec 15.
2016
  1. Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y. Genome sequence and analysis of the Japanese morning glory Ipomoea nil. Nat Commun. 2016 7:13295. doi: 10.1038/ncomms13295.
  2. Shoji K, Suzuki Y, Sugano S, Shimada T, Katsuma S. Artificial "ping-pong" cascade of PIWI-interacting RNA in silkworm cells. RNA. 2017 23:86-97. Epub 2016 Oct 24.
  3. Okada T, Takahashi H, Suzuki Y, Sugano S, Noji M, Kenmoku H, Toyota M, Kanaya S, Kawahara N, Asakawa Y, Sekita S. Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing. Genom Data. 2016 10:4-11.
  4. Sasaki S, Hasegawa K, Higashi T, Suzuki Y, Sugano S, Yasuda Y, Sugimoto Y. A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle. BMC Genomics. 2016, 17:724.
  5. Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji EI, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada KI, Ogawa T, Tojo A, Miyano S, Gotoh N. Addiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells. Oncogene. 2016, Aug 22. doi: 10.1038/onc.2016.293. [Epub ahead of print]
  6. Uno A, Nakamura R, Tsukahara T, Qu W, Sugano S, Suzuki Y, Morishita S, Takeda H. Comparative Analysis of Genome and Epigenome in Closely Related Medaka Species Identifies Conserved Sequence Preferences for DNA Hypomethylated Domains. Zoolog Sci. 2016, 33:358-365.
  7. Tolba ME, Huseein EA, Farrag HM, Mohamed Hel D, Kobayashi S, Suzuki J, Ali TA, Sugano S. Allovahlkampfia spelaea Causing Keratitis in Humans. PLoS Negl Trop Dis. 2016, 10(7):e0004841.
  8. Blaxter M, Danchin A, Savakis B, Fukami-Kobayashi K, Kurokawa K, Sugano S, Roberts RJ, Salzberg SL, Wu CI. Reminder to deposit DNA sequences. Science. 2016, 352:780.
  9. Nishio H, Buzas DM, Nagano AJ, Suzuki Y, Sugano S, Ito M, Morinaga S, Kudoh H. From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri. Genes Genet Syst. 2016, 91:15-26.
  10. Takemata N, Oda A, Yamada T, Galipon J, Miyoshi T, Suzuki Y, Sugano S, Hoffman CS, Hirota K, Ohta K. Local potentiation of stress-responsive genes by upstream noncoding transcription. Nucleic Acids Res. 2016 Mar 3. pii: gkw142. [Epub ahead of print]
  11. Sawada G, Niida A, Uchi R, Hirata H, Shimamura T, Suzuki Y, Shiraishi Y, Chiba K, Imoto S, Takahashi Y, Iwaya T, Sudo T, Hayashi T, Takai H, Kawasaki Y, Matsukawa T, Eguchi H, Sugimachi K, Tanaka F, Suzuki H, Yamamoto K, Ishii H, Shimizu M, Yamazaki H, Yamazaki M, Tachimori Y, Kajiyama Y, Natsugoe S, Fujita H, Mafune K, Tanaka Y, Kelsell DP, Scott CA, Tsuji S, Yachida S, Shibata T, Sugano S, Doki Y, Akiyama T, Aburatani H, Ogawa S, Miyano S, Mori M, Mimori K. Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population. Gastroenterology. 2016 Feb 10. pii: S0016-5085(16)00134-7. doi: 10.1053/j.gastro.2016.01.035. [Epub ahead of print]
2015
  1. Nakatani Y, Mello CC, Hashimoto SI, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S., Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species. BMC Genomics. 2015 Nov 19;16(1):978.
  2. Kubota S, Iwasaki T, Hanada K, Nagano AJ, Fujiyama A, Toyoda A, Sugano S, Suzuki Y, Hikosaka K, Ito M, Morinaga S., A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species. PLoS Genet. 2015 Jul 14;11(7):e1005361. doi: 10.1371/journal.pgen.1005361. eCollection 2015 Jul.
  3. Fukui T, Kawamoto M, Shoji K, Kiuchi T, Sugano S, Shimada T, Suzuki Y, Katsuma S., The Endosymbiotic Bacterium Wolbachia Selectively Kills Male Hosts by Targeting the Masculinizing Gene. PLoS Pathog. 2015 Jul 14;11(7):e1005048. doi: 10.1371/journal.ppat.1005048. eCollection 2015 Jul.
  4. Saeki K, Watanabe M, Tsuboi M, Sugano S, Yoshitake R, Tanaka Y, Ong SM, Saito T, Matsumoto K, Fujita N, Nishimura R, Nakagawa T., Anti-tumour effect of metformin in canine mammary gland tumour cells. Vet J. 2015 Aug;205(2):297-304. doi: 10.1016/j.tvjl.2015.04.026. Epub 2015 Apr 22.
  5. Saeki K, Watanabe M, Michishita M, Tsuboi M, Sugano S, Yoshitake R, Murai K, Tanaka Y, Ong SM, Saito T, Matsumoto K, Fujita N, Nishimura R, Nakagawa T., Phenotypic screening of a library of compounds against metastatic and non-metastatic clones of a canine mammary gland tumour cell line. Vet J. 2015 Aug;205(2):288-96. doi: 10.1016/j.tvjl.2015.04.025. Epub 2015 Apr 23.
  6. Suzuki A, Matsushima K, Makinoshima H, Sugano S, Kohno T, Tsuchihara K, Suzuki Y., Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment. Genome Biol. 2015 Apr 3;16(1):66. [Epub ahead of print]
  7. Maekawa S, Imamachi N, Irie T, Tani H, Matsumoto K, Mizutani R, Imamura K, Kakeda M, Yada T, Sugano S, Suzuki Y, Akimitsu N., Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance. BMC Genomics. 2015 Mar 6;16(1):154. doi: 10.1186/s12864-015-1358-y.
  8. Kokusho R, Kawamoto M, Koyano Y, Sugano S, Suzuki Y, Shimada T, Katsuma S., Bombyx mori nucleopolyhedrovirus ARIF-1 enhances systemic infection in B. mori larvae. J Gen Virol. 2015 Mar 25. pii: vir.0.000130. doi: 10.1099/vir.0.000130. [Epub ahead of print]
  9. Nishikawa H, Iijima T, Kajitani R, Yamaguchi J, Ando T, Suzuki Y, Sugano S, Fujiyama A, Kosugi S, Hirakawa H, Tabata S, Ozaki K, Morimoto H, Ihara K, Obara M, Hori H, Itoh T, Fujiwara H., A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly. Nat Genet. 2015 47:405-409. doi: 10.1038/ng.3241. Epub 2015 Mar 9.
  10. Oda A, Takemata N, Hirata Y, Miyoshi T, Suzuki Y, Sugano S, Ohta K., Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation. Genes Cells. 2015 Mar 2. doi: 10.1111/gtc.12229. [Epub ahead of print]
  11. Yamaguchi K, Komura M, Yamaguchi R, Imoto S, Shimizu E, Kasuya S, Shibuya T, Hatakeyama S, Takahashi N, Ikenoue T, Hata K, Tsurita G, Shinozaki M, Suzuki Y, Sugano S, Miyano S, Furukawa Y., Detection of APC mosaicism by next-generation sequencing in an FAP patient. J Hum Genet. 2015 Feb 26. doi: 10.1038/jhg.2015.14. [Epub ahead of print]
  12. Kawamoto M, Koga H, Kiuchi T, Shoji K, Sugano S, Shimada T, Suzuki Y, Katsuma S., Sexually biased transcripts at early embryonic stages of the silkworm depend on the sex chromosome constitution. Gene. 2015 Apr 10;560(1):50-6. doi: 10.1016/j.gene.2015.01.036. Epub 2015 Jan 20.
  13. Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K., DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data. Nucleic Acids Res. 2015 Jan;43(Database issue):D87-91. doi: 10.1093/nar/gku1080. Epub 2014 Nov 5.
2014
  1. Suzuki A, Makinoshima H, Wakaguri H, Esumi H, Sugano S, Kohno T, Tsuchihara K, Suzuki Y., Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines. Nucleic Acids Res. 2014 42:13557-13572. doi: 10.1093/nar/gku885. Epub 2014 Nov 6.
  2. Shoji K, Hara K, Kawamoto M, Kiuchi T, Kawaoka S, Sugano S, Shimada T, Suzuki Y, Katsuma S. Silkworm HP1a transcriptionally enhances highly expressed euchromatic genes via association with their transcription start sites. Nucleic Acids Res. 2015, 42:11462-11471. doi: 10.1093/nar/gku862. Epub 2014 Sep 18.
  3. Matsumoto K, Suzuki A, Wakaguri H, Sugano S, Suzuki Y. Construction of mate pair full-length cDNAs libraries and characterization of transcriptional start sites and termination sites. Nucleic Acids Res. 2014 Dec 42(16):e125. doi: 10.1093/nar/gku600. Epub 2014 Jul 17.
  4. Firouzi S, L?pez Y, Suzuki Y, Nakai K, Sugano S, Yamochi T, Watanabe T. Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites. Genome Med. 2014 Jun 27;6(6):46. doi: 10.1186/gm568. eCollection 2014.
  5. Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M. Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. Nat Commun. 2014 Jul 9;5:4322. doi: 10.1038/ncomms5322.
  6. Asahi H, Tolba ME, Tanabe M, Sugano S, Abe K, Kawamoto F. Perturbation of copper homeostasis is instrumental in early developmental arrest of intraerythrocytic Plasmodium falciparum. BMC Microbiol. 2014 Jun 24;14:167. doi: 10.1186/1471-2180-14-167.
  7. Maekawa S, Suzuki A, Sugano S, Suzuki Y. RNA sequencing: from sample preparation to analysis. Methods Mol Biol. 2014;1164:51-65. doi: 10.1007/978-1-4939-0805-9_6.
  8. Nakamura R, Tsukahara T, Qu W, Ichikawa K, Otsuka T, Ogoshi K, Saito TL, Matsushima K, Sugano S, Hashimoto S, Suzuki Y, Morishita S, Takeda H. Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates. Development. 2014 Jul;141(13):2568-80. doi: 10.1242/dev.108548. Epub 2014 Jun 12.
  9. Kiuchi T, Koga H, Kawamoto M, Shoji K, Sakai H, Arai Y, Ishihara G, Kawaoka S, Sugano S, Shimada T, Suzuki Y, Suzuki MG, Katsuma S., A single female-specific piRNA is the primary determiner of sex in the silkworm. Nature. 2014 May 14. doi: 10.1038/nature13315. [Epub ahead of print]
  10. Seki M, Masaki H, Arauchi T, Nakauchi H, Sugano S, Suzuki Y., A comparison of the rest complex binding patterns in embryonic stem cells and epiblast stem cells.PLoS One. 2014 Apr 21;9(4):e95374. doi: 10.1371/journal.pone.0095374.
  11. Negishi M, Wongpalee SP, Sarkar S, Park J, Lee KY, Shibata Y, Reon BJ, Abounader R, Suzuki Y, Sugano S, Dutta A., A New lncRNA, APTR, Associates with and Represses the CDKN1A/p21 Promoter by Recruiting Polycomb Proteins. PLoS One. 2014 Apr 18;9(4):e95216. doi: 10.1371/journal.pone.0095216.
  12. Kanda S, Tanigawa S, Ohmori T, Taguchi A, Kudo K, Suzuki Y, Sato Y, Hino S, Sander M, Perantoni AO, Sugano S, Nakao M, Nishinakamura R., Sall1 Maintains Nephron Progenitors and Nascent Nephrons by Acting as Both an Activator and a Repressor.J Am Soc Nephrol. 2014 Apr 17. [Epub ahead of print]
  13. Furuta Y, Namba-Fukuyo H, Shibata TF, Nishiyama T, Shigenobu S, Suzuki Y, Sugano S, Hasebe M, Kobayashi I., Methylome diversification through changes in DNA methyltransferase sequence specificity. PLoS Genet. 2014 Apr 10;10(4):e1004272. doi: 10.1371/journal.pgen.1004272.
  14. Yoshitane H, Ozaki H, Terajima H, Du NH, Suzuki Y, Fujimori T, Kosaka N, Shimba S, Sugano S, Takagi T, Iwasaki W, Fukada Y., CLOCK-Controlled Polyphonic Regulation of Circadian Rhythms through Canonical and Noncanonical E-Boxes. Mol Cell Biol. 2014 34:1776-1787. doi: 10.1128/MCB.01465-13.
  15. Sugano S. Cross-boundary Cancer Studies at the University of Tokyo: Using Genome Science to Decipher Cancer in Asia. Jpn J Clin Oncol. 2014 Feb;44 Suppl 1:i17-i21. doi: 10.1093/jjco/hyt221.
2013
  1. Tomiyasu H, Watanabe M, Sugita K, Goto-Koshino Y, Fujino Y, Ohno K, Sugano S, Tsujimoto H. Regulations of ABCB1 and ABCG2 expression through MAPK pathways in acute lymphoblastic leukemia cell lines. Anticancer Res. 33:5317-5323, 2013.
  2. Hata K, Takashima R, Amano K, Ono K, Nakanishi M, Yoshida M, Wakabayashi M, Matsuda A, Maeda Y, Suzuki Y, Sugano S, Whitson RH, Nishimura R, Yoneda T. Arid5b facilitates chondrogenesis by recruiting the histone demethylase Phf2 to Sox9-regulated genes. Nat Commun. 4:2850, 2013. doi: 10.1038/ncomms3850.
  3. Muto T, Sashida G, Oshima M, Wendt GR, Mochizuki-Kashio M, Nagata Y, Sanada M, Miyagi S, Saraya A, Kamio A, Nagae G, Nakaseko C, Yokote K, Shimoda K, Koseki H, Suzuki Y, Sugano S, Aburatani H, Ogawa S, Iwama A. Concurrent loss of Ezh2 and Tet2 cooperates in the pathogenesis of myelodysplastic disorders. J Exp Med. 210:2627-2639, 2013.
  4. Nishikawa H, Iga M, Yamaguchi J, Saito K, Kataoka H, Suzuki Y, Sugano S, Fujiwara H. Molecular basis of wing coloration in a Batesian mimic butterfly, Papilio polytes. Sci Rep. 3:3184, 2013.
  5. Tolba ME, Kobayashi S, Imada M, Suzuki Y, Sugano S. Giardia lamblia transcriptome analysis using TSS-Seq and RNA-Seq. PLoS One. 8(10):e76184. doi: 10.1371/journal.pone.0076184. eCollection 2013.
  6. Nakayama A, Fukushima S, Goto S, Matsushita A, Shimono M, Sugano S, Jiang CJ, Akagi A, Yamazaki M, Inoue H, Takatsuji H. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol. 2013 Oct 4;13:150. doi: 10.1186/1471-2229-13-150.
  7. Shibui A, Nakae S, Watanabe J, Sato Y, Tolba ME, Doi J, Shiibashi T, Nogami S, Sugano S, Hozumi N. Screening of novel malaria DNA vaccine candidates using full-length cDNA library. Exp Parasitol. 135:546-550, 2013.
  8. Suzuki A, Mimaki S, Yamane Y, Kawase A, Matsushima K, Suzuki M, Goto K, Sugano S, Esumi H, Suzuki Y, Tsuchihara K. Identification and Characterization of Cancer Mutations in Japanese Lung Adenocarcinoma without Sequencing of Normal Tissue Counterparts. PLoS One. 2013 Sep 12;8(9):e73484. doi: 10.1371/journal.pone.0073484.
  9. Kanematsu S, Tanimoto K, Suzuki Y, Sugano S. Screening for possible miRNA-mRNA associations in a colon cancer cell line. Gene. 2013 Aug 9. doi:pii: S0378-1119(13)01021-4. 10.1016/j.gene.2013.08.005. [Epub ahead of print]
  10. Nikaido M, Noguchi H, Nishihara H, Toyoda A, Suzuki Y, Kajitani R, Suzuki H, Okuno M, Aibara M, Ngatunga BP, Mzighani SI, Kalombo HW, Masengi KW, Tuda J, Nogami S, Maeda R, Iwata M, Abe Y, Fujimura K, Okabe M, Amano T, Maeno A, Shiroishi T, Itoh T, Sugano S, Kohara Y, Fujiyama A, Okada N. Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res. 23:1740-1748, 2013.
  11. Shoji K, Kiuchi T, Hara K, Kawamoto M, Kawaoka S, Arimura S, Tsutsumi N, Sugano S, Suzuki Y, Shimada T, Katsuma S. Characterization of a novel chromodomain-containing gene from the silkworm, Bombyx mori. Gene. 527:649-654, 2013.
  12. Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr Biol. 23:1399-1408, 2013.
  13. Suetsugu Y, Futahashi R, Kanamori H, Kadono-Okuda K, Sasanuma S, Narukawa J, Ajimura M, Jouraku A, Namiki N, Shimomura M, Sezutsu H, Osanai-Futahashi M, Suzuki MG, Daimon T, Shinoda T, Taniai K, Asaoka K, Niwa R, Kawaoka S, Katsuma S, Tamura T, Noda H, Kasahara M, Sugano S, Suzuki Y, Fujiwara H, Kataoka H, Arunkumar KP, Tomar A, Nagaraju J, Goldsmith MR, Feng Q, Xia Q, Yamamoto K, Shimada T, Mita K. Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori. G3 (Bethesda). 3:1481-1492, 2013.
  14. Szcze?niak M, Yoneda M, Sato H, Maka?owska I, Kyuwa S, Sugano S, Suzuki Y, Maka?owski W, Kai C. Characterization of the mitochondrial genome of Rousettus leschenaulti. Mitochondrial DNA. 2013 Jul 2. [Epub ahead of print]
  15. Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S. Integrated molecular analysis of clear-cell renal cell carcinoma. Nat Genet. 45:860-867, 2013.
  16. Izumi N, Kawaoka S, Yasuhara S, Suzuki Y, Sugano S, Katsuma S, Tomari Y. Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins. RNA. 19:896-901, 2013.
  17. Hashimoto SI, Ogoshi K, Sasaki A, Abe J, Qu W, Nakatani Y, Ahsan B, Oshima K, Shand FH, Ametani A, Suzuki Y, Kaneko S, Wada T, Hattori M, Sugano S, Morishita S, Matsushima K. Coordinated Changes in DNA Methylation in Antigen-Specific Memory CD4 T Cells. J Immunol. 2013 Mar 18. [Epub ahead of print]
  18. Hosokawa H, Tanaka T, Suzuki Y, Iwamura C, Ohkubo S, Endoh K, Kato M, Endo Y, Onodera A, Tumes DJ, Kanai A, Sugano S, Nakayama T. Functionally distinct Gata3/Chd4 complexes coordinately establish T helper 2 (Th2) cell identity. Proc Natl Acad Sci U S A. 110:4691-4696, 2013.
  19. Takeuchi Y, Fujino Y, Watanabe M, Takahashi M, Nakagawa T, Takeuchi A, Bonkobara M, Kobayashi T, Ohno K, Uchida K, Asano K, Nishimura R, Nakayama H, Sugano S, Ohashi Y, Tsujimoto H. Validation of the prognostic value of histopathological grading or c-kit mutation in canine cutaneous mast cell tumours: A retrospective cohort study. Vet J. 2013 Feb 4. doi:pii: S1090-0233(12)00522-9. 10.1016/j.tvjl.2012.11.018. [Epub ahead of print]
  20. Watanabe T, Oyama T, Asada M, Harada D, Ito Y, Inagawa M, Suzuki Y, Sugano S, Katsube K, Karsenty G, Komori T, Kitagawa M, Asahara H. MAML1 enhances the transcriptional activity of Runx2 and plays a role in bone development. PLoS Genet. 2013 Jan;9(1):e1003132. doi: 10.1371/journal.pgen.1003132. Epub 2013 Jan 10.
  21. Kawaoka S, Hara K, Shoji K, Kobayashi M, Shimada T, Sugano S, Tomari Y, Suzuki Y, Katsuma S. The comprehensive epigenome map of piRNA clusters. Nucleic Acids Res. 2013 Feb 1;41(3):1581-90. doi: 10.1093/nar/gks1275. Epub 2012 Dec 20.
  22. Tomiyasu H, Watanabe M, Goto-Koshino Y, Fujino Y, Ohno K, Sugano S, Tsujimoto H. Regulation of expression of ABCB1 and LRP genes by mitogen-activated protein kinase/extracellular signal-regulated kinase pathway and its role in generation of side population cells in canine lymphoma cell lines. Leuk Lymphoma. 2012 Dec 22. [Epub ahead of print]
2012
  1. Higasa K, Nikaido M, Saito TL, Yoshimura J, Suzuki Y, Suzuki H, Nishihara H, Aibara M, Ngatunga BP, Kalombo HW, Sugano S, Morishita S, Okada N. Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths. Gene. 505:324-332, 2012.
  2. Qu W, Hashimoto S, Shimada A, Nakatani Y, Ichikawa K, Saito TL, Ogoshi K, Matsushima K, Suzuki Y, Sugano S, Takeda H, Morishita S. Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns. Genome Res. 22:1419-1425, 2012.
  3. Tanaka S, Miyagi S, Sashida G, Chiba T, Yuan J, Mochizuki-Kashio M, Suzuki Y, Sugano S, Nakaseko C, Yokote K, Koseki H, Iwama A. Ezh2 augments leukemogenicity by reinforcing differentiation blockage in acute myeloid leukemia. Blood. 120:1107-1117, 2012.
  4. Tabara Y, Kohara K, Miki T; Millennium Genome Project for Hypertension. Hunting for genes for hypertension: the Millennium Genome Project for Hypertension. Hypertens Res. 35:567-573, 2012.
  5. Xu S, Pugach I, Stoneking M, Kayser M, Jin L; HUGO Pan-Asian SNP Consortium. Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proc Natl Acad Sci U S A. 109:4574-4579, 2012.
  6. Shibui A, Shimura E, Nambu A, Yamaguchi S, Leonard WJ, Okumura K, Sugano S, Sudo K, Nakae S. Th17 cell-derived IL-17 is dispensable for B cell antibody production. Cytokine. 2012 Apr 13. [Epub ahead of print]
  7. Okuda T, Wakaguri H, Suzuki Y, Sugano S. Monitoring endoplasmic reticulum stress responsive mRNAs by RNA sequencing. Gene. 2012 Mar 17. [Epub ahead of print]
  8. Hara K, Fujii T, Suzuki Y, Sugano S, Shimada T, Katsuma S, Kawaoka S. Altered expression of testis-specific genes, piRNAs, and transposons in the silkworm ovary masculinized by a W chromosome mutation. BMC Genomics. 2012 Mar 28;13(1):119.
  9. Fujimoto A, Kosaka N, Hasegawa H, Suzuki H, Sugano S, Chiba J. Enhancement of antibody responses to native G protein-coupled receptors using E. coli GroEL as a molecular adjuvant in DNA immunization. J Immunol Methods. 375: 243-251, 2012. Epub 2011 Nov 18.
  10. Kawaoka S, Mitsutake H, Kiuchi T, Kobayashi M, Yoshikawa M, Suzuki Y, Sugano S, Shimada T, Kobayashi J, Tomari Y, Katsuma S. A role for transcription from a piRNA cluster in de novo piRNA production. RNA. 18:265-273, 2012
  11. Tani H, Mizutani R, Salam KA, Tano K, Ijiri K, Wakamatsu A, Isogai T, Suzuki Y, Akimitsu N. Genome-wide determination of RNA stability reveals hundreds of short-lived non-coding transcripts in mammals. Genome Res. 2012 Feb 27 [Epub ahead of print].
  12. Amiruddin N, Lee XW, Blake DP, Suzuki Y, Tay YL, Lim LS, Tomley FM, Watanabe J, Sugimoto C, Wan KL. Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome. BMC Genomics. 2012 Jan 13;13(1):21
  13. Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, Sato S, Nakabayashi K, Hata K, Sotomaru Y, Suzuki Y, Kono T. Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 2012 Jan;8(1):e1002440.
  14. Yamashita R, Sugano S, Suzuki Y, Nakai K. DBTSS: DataBase of Transcriptional Start Sites progress report in 2012. Nucleic Acids Res. 40: D150-D154, 2012.
  15. Karsch-Mizrachi I, Nakamura Y, Cochrane G; International Nucleotide Sequence Database Collaboration. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 40: D33-D37, 2012.
2011
  1. Yang X, Xu S; HUGO Pan-Asian SNP Consortium; Indian Genome Variation Consortium. Identification of close relatives in the HUGO Pan-Asian SNP database. PLoS One. 2011;6(12):e29502.
  2. Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lef?vre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel H, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, M Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol. 2011 Dec 21;12(12):414. [Epub ahead of print]
  3. Shibui A, Doi J, Tolba ME, Shiraishi C, Sato Y, Ishikawa S, Watanabe J, Nogami S, Nakae S, Sugano S, Hozumi N. N-acetylglucosaminyltransferase V-deficiency increases susceptibility to murine malaria. Exp Parasitol. 129:318-321, 2011.
  4. Okamura K, Yamashita R, Takimoto N, Nishitsuji K, Suzuki Y, Kusakabe TG, Nakai K. Profiling ascidian promoters as the primordial type of vertebrate promoter. BMC Genomics. 2011 Nov 30;12 Suppl 3:S7.
  5. Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y. Linear regression models predicting strength of transcriptional activity of promoters. Genome Inform. 25: 53-60, 2011.
  6. Yamagishi J, Watanabe J, Goo YK, Masatani T, Suzuki Y, Xuan X. Characterization of Toxoplasma gondii 5' UTR with Encyclopedic TSS Information. J Parasitol. 2011 Oct 1 [Epub ahead of print].
  7. Avasthi TS, Devi SH, Taylor TD, Kumar N, Baddam R, Kondo S, Suzuki Y, Lamouliatte H, M?graud F, Ahmed N. Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. J Bacteriol. 193: 3385-3386, 2011.
  8. Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lef?vre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, M Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol. 2011 Aug 29;12(8):R81. [Epub ahead of print]
  9. Ogoshi K, Hashimoto S, Nakatani Y, Qu W, Oshima K, Tokunaga K, Sugano S, Hattori M, Morishita S, Matsushima K. Genome-wide profiling of DNA methylation in human cancer cells. Genomics. 98:280-287, 2011.
  10. Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S, Ogawa S. Frequent pathway mutations of splicing machinery in myelodysplasia. Nature. 478:64-69, 2011.
  11. Kanai A, Suzuki K, Tanimoto K, Mizushima-Sugano J, Suzuki Y, Sugano S. Characterization of STAT6 Target Genes in Human B Cells and Lung Epithelial Cells. DNA Res. 2011 Aug 9. [Epub ahead of print]
  12. Takeuchi Y, Fujino Y, Watanabe M, Nakagawa T, Ohno K, Sasaki N, Sugano S, Tsujimoto H. Screening of Therapeutic Targets for Canine Mast Cell Tumors from a Variety of Kinase Molecules. J Vet Med Sci. 2011 Jun 7. [Epub ahead of print]
  13. Kawaoka S, Arai Y, Kadota K, Suzuki Y, Hara K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S. Zygotic amplification of secondary piRNAs during silkworm embryogenesis. RNA. 2011 Jul;17(7):1401-7. Epub 2011 May 31.
  14. Horiuchi S, Onodera A, Hosokawa H, Watanabe Y, Tanaka T, Sugano S, Suzuki Y, Nakayama T. Genome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3. J Immunol. 2011 Jun 1;186(11):6378-89. Epub 2011 May 2.
  15. Shibui A, Nambu A, Shimura E, Yamaguchi S, Shiraishi C, Sato Y, Okumura K, Sugano S, Hozumi N, Nakae S. Alteration of Immune Responses by N-acetylglucosaminyltransferase V during Allergic Airway Inflammation. Allergol Int. 2011 Apr 25. [Epub ahead of print]
  16. Irie T, Park SJ, Yamashita R, Seki M, Yada T, Sugano S, Nakai K, Suzuki Y. Predicting promoter activities of primary human DNA sequences. Nucleic Acids Res. 2011 Jun 1;39(11):e75. Epub 2011 Apr 12.
  17. Kim RN, Kim DW, Choi SH, Chae SH, Nam SH, Kim DW, Kim A, Kang A, Park KH, Lee YS, Hirai M, Suzuki Y, Sugano S, Hashimoto K, Kim DS, Park HS. Major chimpanzee-specific structural changes in sperm development-associated genes. Funct Integr Genomics. 2011 Apr 12. [Epub ahead of print]
  18. Hatin WI, Nur-Shafawati AR, Zahri MK, Xu S, Jin L, Tan SG, Rizman-Idid M, Zilfalil BA; HUGO Pan-Asian SNP Consortium. Population genetic structure of peninsular Malaysia Malay sub-ethnic groups. PLoS One. 2011 Apr 5;6(4):e18312.
  19. Takeuchi Y, Fujino Y, Fukushima K, Watanabe M, Nakagawa T, Ohno K, Sasaki N, Sugano S, Tsujimoto H. Biological effect of tyrosine kinase inhibitors on three canine mast cell tumor cell lines with various KIT statuses. J Vet Pharmacol Ther. 2011 Apr 12. doi: 10.1111/j.1365-2885.2011.01296.x. [Epub ahead of print]
  20. Yamagishi J, Wakaguri H, Sugano S, Kawano S, Fujisaki K, Sugimoto C, Watanabe J, Suzuki Y, Kimata I, Xuan X. Construction and analysis of full-length cDNA library of Cryptosporidium parvum. Parasitol Int. 2011 Mar 21. [Epub ahead of print]
  21. Yamashita R, Sathira NP, Kanai A, Tanimoto K, Arauchi T, Tanaka Y, Hashimoto SI, Sugano S, Nakai K, Suzuki Y. Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. Genome Res. 21:775-789 2011.
  22. Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M, Ichikawa T, Kuroda H, Kusano M, Mori M, Saitou T, Sakakibara H, Sugano S, Suzuki M, Takahashi H, Takahashi S, Takatsuji H, Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K, Hirochika H, Matsui M. RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function. Plant Cell Physiol. 52:265-273, 2011.
  23. Watanabe M, Suzuki T, Kim M, Abe Y, Yoshida Y, Sugano S, Yamamoto T. Coronin7 forms a novel E3 ubiquitin ligase complex to promote the degradation of the anti-proliferative protein Tob. FEBS Lett. 586: 65-70, 2011. 2010 Dec 3. [Epub ahead of print]
  24. Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, G?ntert P, Yokoyama S, Muto Y. Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM. Nucleic Acids Res. 39:1538-1553, 2011. 2010 Oct 5. [Epub ahead of print]
  25. Tuda J, Mongan AE, Tolba ME, Imada M, Yamagishi J, Xuan X, Wakaguri H, Sugano S, Sugimoto C, Suzuki Y. Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update. Nucleic Acids Res. 39: D625-D631,2011. 2010 Nov 4. [Epub ahead of print]
  26. Sathirapongsasuti JF, Sathira N, Suzuki Y, Huttenhower C, Sugano S. Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing. Nucleic Acids Res. 39: 1967-1979,2011. 2010 Nov 9. [Epub ahead of print]
2010
  1. Tanimoto K, Tsuchihara K, Kanai A, Arauchi T, Esumi H, Suzuki Y, Sugano S. Genome-wide identification and annotation of HIF-1α binding sites in two cell lines using massively parallel sequencing. Hugo J. 4:35-48, 2010.
  2. Tasaki S, Nagasaki M, Kozuka-Hata H, Semba K, Gotoh N, Hattori S, Inoue JI, Yamamoto T, Miyano S, Sugano S, Oyama M. Phosphoproteomics-Based Modeling Defines the Regulatory Mechanism Underlying Aberrant EGFR Signaling. PLoS One. 2010 Nov 10;5(11):e13926.
  3. Hatanaka F, Matsubara C, Myung J, Yoritaka T, Kamimura N, Tsutsumi S, Kanai A, Suzuki Y, Sassone-Corsi P, Aburatani H, Sugano S, Takumi T. Genome-wide profiling of the core clock protein BMAL1 targets reveals strict relationship with metabolism. Mol Cell Biol. 30:5636-5648, 2010. 2010 Oct 11. [Epub ahead of print]
  4. Terashima M, Ishimura A, Yoshida M, Suzuki Y, Sugano S, Suzuki T. The tumor suppressor Rb and its related Rbl2 genes are regulated by Utx histone demethylase. Biochem Biophys Res Commun. 399:238-244, 2010. Epub 2010 Jul 30.
  5. Takeuchi Y, Fujino Y, Watanabe M, Nakagawa T, Ohno K, Sasaki N, Sugano S, Tsujimoto H. Aberrant autophosphorylation of c-Kit receptor in canine mast cell tumor cell lines. Vet Immunol Immunopathol. 137:208-216, 2010.
  6. Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak S, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK. The Landscape of C. elegans 3'UTRs. Science. 329:432-435, 2010.
  7. Yamagishi J, Wakaguri H, Ueno A, Goo YK, Tolba M, Igarashi M, Nishikawa Y, Sugimoto C, Sugano S, Suzuki Y, Watanabe J, Xuan X. High-Resolution Characterization of Toxoplasma gondii Transcriptome with a Massive Parallel Sequencing Method. DNA Res. 17:233-243, 2010.
  8. Kuroshu RM, Watanabe J, Sugano S, Morishita S, Suzuki Y, Kasahara M. Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly. PLoS One. 5:e10517 2010.
  9. Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Inoue M, Tanaka A, Sugano S, Kigawa T, Yokoyama S. Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein. Proteins. 78:2176-2180 2010.
  10. Sathira N, Yamashita R, Tanimoto K, Kanai A, Arauchi T, Kanematsu S, Nakai K, Suzuki Y, Sugano S. Characterization of Transcription Start Sites of Putative Non-coding RNAs by Multifaceted Use of Massively Paralleled Sequencer. DNA Res. 17:169-182, 2010.
  11. Suzuki S, Tanaka T, Poyurovsky MV, Nagano H, Mayama T, Ohkubo S, Lokshin M, Hosokawa H, Nakayama T, Suzuki Y, Sugano S, Sato E, Nagao T, Yokote K, Tatsuno I, Prives C. Phosphate-activated glutaminase (GLS2), a p53-inducible regulator of glutamine metabolism and reactive oxygen species. Proc Natl Acad Sci U S A. 107:7461-7466, 2010.
  12. Fang HY, Chang CL, Hsu SH, Huang CY, Chiang SF, Chiou SH, Huang CH, Hsiao YT, Lin TY, Chiang IP, Hsu WH, Sugano S, Chen CY, Lin CY, Ko WJ, Chow KC. ATPase family AAA domain-containing 3A is a novel anti-apoptotic factor in lung adenocarcinoma cells. J Cell Sci. 123:1171-1180, 2010.
  13. Shida M, Arakawa A, Ishii R, Kishishita S, Takagi T, Kukimoto-Niino M, Sugano S, Tanaka A, Shirouzu M, Yokoyama S. Direct inter-subdomain interactions switch between the closed and open forms of the Hsp70 nucleotide-binding domain in the nucleotide-free state. Acta Crystallogr D Biol Crystallogr. 66:223-232, 2010.
  14. Hodo Y, Hashimoto SI, Honda M, Yamashita T, Suzuki Y, Sugano S, Kaneko S, Matsushima K. Comprehensive gene expression analysis of 5'-end of mRNA identified novel intronic transcripts associated with hepatocellular carcinoma. Genomics. 95:217-223, 2010.
  15. Takeda J, Suzuki Y, Sakate R, Sato Y, Gojobori T, Imanishi T, Sugano S. H-DBAS: human-transcriptome database for alternative splicing: update 2010. Nucleic Acids Res. 38:D86-90, 2010.
  16. Yamashita R, Wakaguri H, Sugano S, Suzuki Y, Nakai K. DBTSS provides a tissue specific dynamic view of Transcription Start Sites. Nucleic Acids Res. 38:D98-104 2010.
2009
  1. HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, Lee S, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM, Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium. Mapping human genetic diversity in Asia. Science. 326:1541-1545, 2009.
  2. WATANABE M, CHEN IY, ISHIKURA Y, NAKAGAWA T, MOCHIZUKI M, NISHIMURA R, SASAKI N, SUGANO S. Tumor Cell growth inhibition and cell differentiation analysis in a canine mammary tumor cell line (MCM-B2) treated with four chemical reagents. J Vet Med Sci. 71:1413-1417, 2009.
  3. Wakamatsu A, Kimura K, Yamamoto J, Nishikawa T, Nomura N, Sugano S, Isogai T. Identification and functional analyses of 11,769 full-length human cDNAs focused on alternative splicing. DNA Res. 16:371-383,2009.
  4. Nakagawa T, Endo Y, Watanabe M, Mochizuki M, Nishimura R, Sugano S, Sasaki N. Adhesional function of canine mammary gland tumor cells expressing sialyl lewis x. J Vet Med Sci. 71:1225-1228, 2009.
  5. Osada N, Hirata M, Tanuma R, Suzuki Y, Sugano S, Terao K, Kusuda J, Kameoka Y, Hashimoto K, Takahashi I. Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus. BMC Res Notes. 2009 Sep 29;2(1):199. [Epub ahead of print]
  6. Kimura K, Suzuki Y, Sugano S, Koike A. Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences. J Comput Biol. 2009 Sep 22. [Epub ahead of print]
  7. Ishimura A, Terashima M, Kimura H, Akagi K, Suzuki Y, Sugano S, Suzuki T. Jmjd2c histone demethylase enhances the expression of Mdm2 oncogene. Biochem Biophys Res Commun. 389:366-371, 2009.
  8. Wakaguri H, Suzuki Y, Sasaki M, Sugano S, Watanabe J. Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs. BMC Genomics. 2009 Jul 15;10(1): 312.
  9. Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Muto Y, Yokoyama S. Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3. Nucleic Acids Res. 37: 5151-5166, 2009.
  10. Kawaoka S, Hayashi N, Suzuki Y, Abe H, Sugano S, Tomari Y, Shimada T, Katsuma S. The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. RNA 15: 1258-1264, 2009.
  11. Shibui A, Hozumi N, Shiraishi C, Sato Y, Iida H, Sugano S, Watanabe J. CD4(+) T cell response in early erythrocytic stage malaria: Plasmodium berghei infection in BALB/c and C57BL/6 mice. Parasitol Res. 105: 281-286, 2009.
  12. Igarashi M, Watanabe M, Yoshida M, Sugaya K, Endo Y, Miyajima N, Abe M, Sugano S, Nakae D. Enhancement of lung carcinogenesis initiated with 4-(N-hydroxymethylnitrosamino)-1-(3-pyridyl)-1-butanone by Ogg1 gene deficiency in female, but not male, mice. J Toxicol Sci. 34: 163-174, 2009.
  13. Tsuchihara K, Suzuki Y, Wakaguri H, Irie T, Tanimoto K, Hashimoto SI, Matsushima K, Mizushima-Sugano J, Yamashita R, Nakai K, Bentley D, Esumi H, Sugano S. Massive transcriptional start site analysis of human genes in hypoxia cells. Nucleic Acids Res. 37: 2249-2263, 2009. 2009 Feb 22. [Epub ahead of print]
  14. Hiwasa T, Shimada H, Kuboshima M, Shiratori T, Kagaya A, Nabeya Y, Sugano S, Ochiai T, Matsubara H, Takiguchi M. Decrease in chemosensitivity against anticancer drugs by an esophageal squamous cell carcinoma SEREX antigen, AISEC. Int J Oncol. 34:641-648, 2009.
  15. Wang H, Takemoto C, Akasaka R, Uchikubo-Kamo T, Kishishita S, Murayama K, Terada T, Chen L, Liu ZJ, Wang BC, Sugano S, Tanaka A, Inoue M, Kigawa T, Shirouzu M, Yokoyama S. Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator. J Struct Biol. 166: 32-37, 2009.
  16. Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K. High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. PLoS ONE. 2009;4(1):e4108. Epub 2009 Jan 1.
  17. Maruyama Y, Wakamatsu A, Kawamura Y, Kimura K, Yamamoto J, Nishikawa T, Kisu Y, Sugano S, Goshima N, Isogai T, Nomura N. Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics. Nucleic Acids Res. 37:D762-D766, 2009.
  18. Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto SI, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, Takeda H, Fire A, Morishita S. Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites. Science. 32:401-404, 2009.
  19. Oyama M, Kozuka-Hata H, Tasaki S, Semba K, Hattori S, Sugano S, Inoue JI, Yamamoto T. Temporal perturbation of tyrosine-phosphoproteome dynamics reveals the system-wide regulatory networks. Mol Cell Proteomics. 8:226-231, 2009
2008
  1. International Silkworm Genome Consortium. The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem Mol Biol. 38:1036-1045, 2008.
  2. Lee YS, Choi SL, Kim TH, Lee JA, Kim HK, Kim H, Jang DJ, Lee JJ, Lee S, Sin GS, Kim CB, Suzuki Y, Sugano S, Kubo T, Moroz LL, Kandel ER, Bhak J, Kaang BK. Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai. Proc Natl Acad Sci U S A. 105:18602-18607, 2008
  3. Wakaguri H, Suzuki Y, Katayama T, Kawashima S, Kibukawa E, Hiranuka K, Sasaki M, Sugano S, Watanabe J. Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009. Nucleic Acids Res. 37:D520-D525, 2009 Nov 4. 2008[Epub ahead of print]
  4. Watanabe M, Miyajima N, Igarashi M, Endo Y, Watanabe N, Sugano S. Sodium phenylacetate inhibits the Ras/MAPK signaling pathway to induce reduction of the c-Raf-1 protein in human and canine breast cancer cells. Breast Cancer Res Treat. 2008 Oct 25. [Epub ahead of print]
  5. Takeda J, Suzuki Y, Sakate R, Sato Y, Seki M, Irie T, Takeuchi N, Ueda T, Nakao M, Sugano S, Gojobori T, Imanishi T. Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs. Nucleic Acids Res. 36: 6386-6395, 2008.
  6. Yoshikawa F, Sato Y, Tohyama K, Akagi T, Hashikawa T, Nagakura-Takagi Y, Sekine Y, Morita N, Baba H, Suzuki Y, Sugano S, Sato A, Furuichi T. Opalin, a transmembrane sialylglycoprotein located in the CNS myelin paranodal loop membrane. J Biol Chem. 283:20830-20840, 2008 May 19. [Epub ahead of print]
  7. Yamashita R, Suzuki Y, Takeuchi N, Wakaguri H, Ueda T, Sugano S, Nakai K. Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics. Nucleic Acids Res. 36: 3707-3715, 2008.
  8. Hagiwara K, Sato H, Inoue Y, Watanabe A, Yoneda M, Ikeda F, Fujita K, Fukuda H, Takamura C, Kozuka-Hata H, Oyama M, Sugano S, Ohmi S, Kai C. Phosphorylation of measles virus nucleoprotein upregulates the transcriptional activity of minigenomic RNA. Proteomics. 8:1871-1879, 2008.
  9. Nakao N, Ono H, Yamamura T, Anraku T, Takagi T, Higashi K, Yasuo S, Katou Y, Kageyama S, Uno Y, Kasukawa T, Iigo M, Sharp PJ, Iwasawa A, Suzuki Y, Sugano S, Niimi T, Mizutani M, Namikawa T, Ebihara S, Ueda HR, Yoshimura T. Thyrotrophin in the pars tuberalis triggers photoperiodic response. Nature. 452:317-322, 2008.
  10. Davuluri RV, Suzuki Y, Sugano S, Plass C, Huang TH. The functional consequences of alternative promoter use in mammalian genomes. Trends Genet. 24:167-177, 2008.
  11. Osada N, Hashimoto K, Kameoka Y, Hirata M, Tanuma R, Uno Y, Inoue I, Hida M, Suzuki Y, Sugano S, Terao K, Kusuda J, Takahashi I. Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta. BMC Genomics. 2008 Feb 24;9:90.
  12. Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A. Human Proteinpedia enables sharing of human protein data. Nat Biotechnol. 2008 Feb;26(2):164-7.
  13. Nishimura M, Kaminishi T, Takemoto C, Kawazoe M, Yoshida T, Tanaka A, Sugano S, Shirouzu M, Ohkubo T, Yokoyama S, Kobayashi Y. Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold. J Mol Biol. 377: 412-430, 2008.
  14. Li C, Wang Y, Yu Y, Liu L, Zhang M, Sugano S, Wang Z, Chang Z. Both ERK and JNK pathways are required for PMA-induced MD-2 gene expression during HL-60 cells differentiation. Biol Cell. 100:365-375, 2008.
  15. Uno Y, Suzuki Y, Wakaguri H, Sakamoto Y, Sano H, Osada N, Hashimoto K, Sugano S, Inoue I. Expressed sequence tags from cynomolgus monkey (Macaca fascicularis) liver: A systematic identification of drug-metabolizing enzymes. FEBS Lett. 582:351-358, 2008.
  16. Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M, Minoshima S, Ohtsubo M, Hanada K, Tonellato P, Isogai T, Zhang J, Lenhard B, Kim S, Chen Z, Hinz U, Estreicher A, Nakai K, Makalowska I, Hide W, Tiffin N, Wilming L, Chakraborty R, Soares MB, Chiusano ML, Suzuki Y, Auffray C, Yamaguchi-Kabata Y, Itoh T, Hishiki T, Fukuchi S, Nishikawa K, Sugano S, Nomura N, Tateno Y, Imanishi T, Gojobori T. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res. 36: D793-D799, 2008.
  17. Handa N, Kishishita S, Morita S, Akasaka R, Jin Z, Chrzas J, Chen L, Liu ZJ, Wang BC, Sugano S, Tanaka A, Terada T, Shirouzu M, Yokoyama S. Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form. Acta Crystallogr D Biol Crystallogr. 63:1225-1234, 2007.
  18. Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science. 319: 64-69, 2008.
  19. Wakaguri H, Yamashita R, Suzuki Y, Sugano S, Nakai K. DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res. 36: D97-D100, 2008
  20. Ahsan B, Kobayashi D, Yamada T, Kasahara M, Sasaki S, Saito TL, Nagayasu Y, Doi K, Nakatani Y, Qu W, Jindo T, Shimada A, Naruse K, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto SI, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Kohara Y, Morishita S. UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 36: D747-D752, 2008.
2007
  1. Okabe T, Ohmori Y, Tanigami A, Hishigaki H, Suzuki Y, Sugano S, Kawaguchi A, Nakaya H, Wakitani S. Detection of gene expression in synovium of patients with osteoarthritis using a random sequencing method. Acta Orthop. 78: 687-692, 2007.
  2. Nishimura M, Kaminishi T, Kawazoe M, Shirouzu M, Takemoto C, Yokoyama S, Tanaka A, Sugano S, Yoshida T, Ohkubo T, Kobayashi Y.Purification, crystallization and preliminary X-ray diffraction study of human ribosomal protein L10 core domain. Acta Crystallogr Sect F Struct Biol Cryst Commun. 63: 950-952, 2007. Epub 2007 Oct 24.
  3. Kato N, Miyata T, Tabara Y, Katsuya T, Yanai K, Hanada H, Kamide K, Nakura J, Kohara K, Takeuchi F, Mano H, Yasunami M, Kimura A, Kita Y, Ueshima H, Nakayama T, Soma M, Hata A, Fujioka A, Kawano Y, Nakao K, Sekine A, Yoshida T, Nakamura Y, Saruta T, Ogihara T, Sugano S, Miki T, Tomoike H. High-Density Association Study and Nomination of Susceptibility Genes for Hypertension in the Japanese National Project. Hum Mol Genet. 2007 Nov 14; [Epub ahead of print]
  4. Funakoshi T, Maeshima K, Yahata K, Sugano S, Imamoto F, Imamoto N. Two distinct human POM121 genes: Requirement for the formation of nuclear pore complexes. FEBS Lett. 581: 4910-4916, 2007. Epub 2007 Sep 21.
  5. Yamamoto YY, Ichida H, Abe T, Suzuki Y, Sugano S, Obokata J. Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis. Nucleic Acids Res. 35: 6219-6226, 2007.
  6. Takauji SR, Watanabe M, Uyama R, Nakagawa T, Miyajima N, Mochizuki M, Nishimura R, Sugano S, Sasaki N. Expression and subcellular localization of E-cadherin, alpha-catenin, and beta-catenin in 8 feline mammary tumor cell lines. J Vet Med Sci. 69: 831-834, 2007.
  7. Muramatsu S, Wakabayashi M, Ohno T, Amano K, Ooishi R, Sugahara T, Shiojiri S, Tashiro K, Suzuki Y, Nishimura R, Kuhara S, Sugano S, Yoneda T, Matsuda A. Functional gene screening system identified TRPV4 as a regulator of chondrogenic differentiation. J Biol Chem. 282: 32158-32167, 2007.
  8. Lan NT, Yamaguchi R, Kawabata A, Uchida K, Sugano S, Tateyama S. Comparison of molecular and growth properties for two different canine distemper virus clusters, Asia 1 and 2, in Japan. J Vet Med Sci. 69: 739-744, 2007.
  9. He F, Umehara T, Tsuda K, Inoue M, Kigawa T, Matsuda T, Yabuki T, Aoki M, Seki E, Terada T, Shirouzu M, Tanaka A, Sugano S, Muto Y, Yokoyama S. Solution structure of the zinc finger HIT domain in protein FON. Protein Sci. 16: 1577-1587, 2007.
  10. Igarashi M, Yoshida M, Watanabe M, Yamada T, Sakurai T, Endo Y, Miyajima N, Maekawa A, Oikawa T, Sugano S, Nakae D. Involvement of Mutation-based Inhibition of beta-Catenin Phosphorylation at Ser33 in the Malignant Progression of Lung (Pre)neoplastic Lesions Induced by N-nitrosobis(2-hydroxypropyl)amine in Male Fischer 344 Rats. Lung 185: 271-278, 2007. Epub 2007 Jul 18.
  11. Tsuritani K, Irie T, Yamashita R, Sakakibara Y, Wakaguri H, Kanai A, Mizushima-Sugano J, Sugano S, Nakai K, Suzuki Y. Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes. Genome Res. 17: 1005-1014, 2007.
  12. Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K, Kasai Y, Jindo T, Kobayashi D, Shimada A, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Morishita S, Kohara Y. The medaka draft genome and insights into vertebrate genome evolution. Nature. 447: 714-719, 2007.
  13. Sakakibara Y, Irie T, Suzuki Y, Yamashita R, Wakaguri H, Kanai A, Chiba J, Takagi T, Mizushima-Sugano J, Hashimoto SI, Nakai K, Sugano S. Intrinsic Promoter Activities of Primary DNA Sequences in the Human Genome. DNA Res. 14: 71-77, 2007.
  14. Shimada A, Niwa H, Tsujita K, Suetsugu S, Nitta K, Hanawa-Suetsugu K, Akasaka R, Nishino Y, Toyama M, Chen L, Liu ZJ, Wang BC, Yamamoto M, Terada T, Miyazawa A, Tanaka A, Sugano S, Shirouzu M, Nagayama K, Takenawa T, Yokoyama S. Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis. Cell. 129: 761-772, 2007.
  15. Watanabe J, Wakaguri H, Sasaki M, Suzuki Y, Sugano S. Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs. Nucleic Acids Res. 35: D431-438, 2007. Epub 2006 Dec 6.
  16. Takeda J, Suzuki Y, Nakao M, Kuroda T, Sugano S, Gojobori T, Imanishi T. H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Res. 35: D104-D109, 2007. Epub 2006 Nov 27.
  17. Oyama M, Kozuka-Hata H, Suzuki Y, Semba K, Yamamoto T, Sugano S. Diversity of translation start sites may define increased complexity of the human short ORFeome. Mol Cell Proteomics. 2007 Feb 21; [Epub ahead of print]
  18. Funaguma S, Hashimoto S, Suzuki Y, Omuro N, Sugano S, Mita K, Katsuma S, Shimada T. SAGE analysis of early oogenesis in the silkworm, Bombyx mori. Insect Biochem Mol Biol.37:147-154, 2007. Epub 2006 Nov 15.
  19. Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S. AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. BMC Bioinformatics. 2007 Jan 18;8:15.
2006
  1. Wang HY, Chien HC, Osada N, Hashimoto K, Sugano S, Gojobori T, Chou CK, Tsai SF, Wu CI, Shen CK. Rate of Evolution in Brain-Expressed Genes in Humans and Other Primates. PLoS Biol. 2006 Dec 26;5:e13 [Epub ahead of print]
  2. Kuwasako K, He F, Inoue M, Tanaka A, Sugano S, Guntert P, Muto Y, Yokoyama S. Solution Structures of the SURP Domains and the Subunit-Assembly Mechanism within the Splicing Factor SF3a Complex in 17S U2 snRNP. Structure. 2006 14:1677-1689.
  3. Cheong J, Yamada Y, Yamashita R, Irie T, Kanai A, Wakaguri H, Nakai K, Ito T, Saito I, Sugano S, Suzuki Y. Diverse DNA methylation statuses at alternative promoters of human genes in various tissues. DNA Res. 2006;13:155-167. Epub 2006 Oct 26.
  4. Lan NT, Yamaguchi R, Kawabata A, Uchida K, Kai K, Sugano S, Tateyama S. Stability of canine distemper virus (CDV) after 20 passages in Vero-DST cells expressing the receptor protein for CDV. Vet Microbiol. 2006 118:177-188. Epub 2006 Sep 18.
  5. Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs. Nucleic Acids Res. 2006;34:3917-3928. Epub 2006 Aug 12.
  6. Khan A, Bohme U, Kelly KA, Adlem E, Brooks K, Simmonds M, Mungall K, Quail MA, Arrowsmith C, Chillingworth T, Churcher C, Harris D, Collins M, Fosker N, Fraser A, Hance Z, Jagels K, Moule S, Murphy L, O'Neil S, Rajandream MA, Saunders D, Seeger K, Whitehead S, Mayr T, Xuan X, Watanabe J, Suzuki Y, Wakaguri H, Sugano S, Sugimoto C, Paulsen I, Mackey AJ, Roos DS, Hall N, Berriman M, Barrell B, Sibley LD, Ajioka JW. Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii. Genome Res. 2006 16:1119-1125. Epub 2006 Aug 10.
  7. Yamamoto N, Imai J, Watanabe M, Hiroi N, Sugano S, Yoshino G. Restoration of transforming growth factor-beta type II receptor reduces tumorigenicity in the human adrenocortical carcinoma SW-13 cell line. Horm Metab Res. 38:159-166, 2006.
  8. Suzuki Y, Sugano S. Transcriptome analyses of human genes and applications for proteome analyses. Curr Protein Pept Sci. 7:147-163, 2006.
  9. Hamada T, Ito Y, Abe T, Hayashi F, Guntert P, Inoue M, Kigawa T, Terada T, Shirouzu M, Yoshida M, Tanaka A, Sugano S, Yokoyama S, Hirota H. Solution structure of the antifreeze-like domain of human sialic acid synthase. Protein Sci. 2006 Apr 5; [Epub ahead of print]
  10. Osawa A, Kato M, Matsumoto E, Iwase K, Sugimoto T, Matsui T, Ishikura H, Sugano S, Kurosawa H, Takiguchi M, Seki N. Activation of genes for growth factor and cytokine pathways late in chondrogenic differentiation of ATDC5 cells. Genomics. 2006 Apr 3; [Epub ahead of print]
  11. Miyajima N, Watanabe M, Ohashi E, Mochizuki M, Nishimura R, Ogawa H, Sugano S, Sasaki N. Relationship between retinoic acid receptor alpha gene expression and growth-inhibitory effect of all-trans retinoic acid on canine tumor cells. J Vet Intern Med. 2006 20:348-354.
  12. Yamamoto K, Ohishi M, Katsuya T, Ito N, Ikushima M, Kaibe M, Tatara Y, Shiota A, Sugano S, Takeda S, Rakugi H, Ogihara T. Deletion of angiotensin-converting enzyme 2 accelerates pressure overload-induced cardiac dysfunction by increasing local angiotensin II. Hypertension. 2006 47:718-726. Epub 2006 Feb 27.
  13. Lan NT, Yamaguchi R, Inomata A, Furuya Y, Uchida K, Sugano S, Tateyama S. Comparative analyses of canine distemper viral isolates from clinical cases of canine distemper in vaccinated dogs. Vet Microbiol. 2006 Feb 24; [Epub ahead of print]
  14. Tsai CC, Huang KW, Chen HF, Zhan BW, Lai YH, Lee FH, Lin CY, Ho YC, Chao YW, Su YC, Jane SW, Chen YC, Hsu CI, Li PH, Hsu HC, Suzuki Y, Sugano S, Lin JY. Gene expression analysis of human hepatocellular carcinoma by using full-length cDNA library. J Biomed Sci. 2006 13:241-249.
  15. Yamashita R, Suzuki Y, Wakaguri H, Tsuritani K, Nakai K, Sugano S. DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res. 2006 34:D86-89.
  16. Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res. 2006 16:55-65. Epub 2005 Dec 12.
2005
  1. Shibui A, Shiibashi T, Nogami S, Sugano S, Watanabe J. A novel method for development of malaria vaccines using full-length cDNA libraries. Vaccine. 23:4359-4366, 2005.
  2. Tahira T, Baba S, Higasa K, Kukita Y, Suzuki Y, Sugano S, Hayashi K. dbQSNP: A database of SNPs in human promoter regions with allele frequency information determined by single-strand conformation polymorphism-based methods. Hum Mutat. 26:69-77, 2005
  3. Osada N, Hirata M, Tanuma R, Kusuda J, Hida M, Suzuki Y, Sugano S, Gojobori T, Shen CK, Wu CI, Hashimoto K. Substitution Rate and Structural Divergence of 5'UTR Evolution: Comparative Analysis Between Human and Cynomolgus Monkey cDNAs. Mol Biol Evol. 22: 1976-1982,2005. 2005 Jun 8; [Epub ahead of print]
  4. Kasai Y, Hashimoto SI, Yamada T, Sese J, Sugano S, Matsushima K, Morishita S. 5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Res. 33:D550-D552, 2005.
  5. Scott A, Pantoja-Uceda D, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Sugano S, Yokoyama S, Guntert P. Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes. J Biomol NMR. 31: 357-361, 2005.
  6. Lan NT, Yamaguchi R, Uchida K, Sugano S, Tateyama S. Growth Profiles of Recent Canine Distemper Isolates on Vero Cells Expressing Canine Signalling Lymphocyte Activation Molecule (SLAM). J Comp Pathol. 133: 77-81, 2005.
  7. Eichinger L, Pachebat JA, Glockner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A. The genome of the social amoeba Dictyostelium discoideum. Nature. 435: 43-57, 2005.
  8. Kamei Y, Aoyama Y, Fujimoto T, Kenmotsu N, Kishi C, Koushi M, Sugano S, Morohashi K, Kamiyama R, Asakai R. A steroidogenic cell line with differentiation potential from mouse granulosa cells, transfected with Ad4BP and SV40 large T antigen genes. J Endocrinol. 185: 187-195, 2005.
  9. Yamashita R, Suzuki Y, Sugano S, Nakai K. Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. Gene. 350:129-136, 2005.
  10. Yamaguchi R, Kojimoto A, Sakai H, Uchida K, Sugano S, Tateyama S. Growth characteristics of canine distemper virus in a new cell line CCT cells originated from canine malignant histiocytosis. J Vet Med Sci. 67: 203-206, 2005.
  11. Ikezawa T, Ichikawa T, Adachi K, Sugano S, Ojima T, Nakamura Y, Watanabe Y, Ishihara K. Analysis of mucin composition in gastric juices of chronic rheumatic patients with upper gastrointestinal damage. Biomed Res. 26: 147-151, 2005.
  12. Miyajima N, Watanabe M, Ohashi E, Ohmori K, Mochizuki M, Nishimura R, Ogawa H, Sugano S, Sasaki N. Identification and characterization of a canine highly similar to retinoic acid receptor alpha. DNA Seq. 16: 7-15, 2005.
  13. Otsuki T, Ota T, Nishikawa T, Hayashi K, Suzuki Y, Yamamoto J, Wakamatsu A, Kimura K, Sakamoto K, Hatano N, Kawai Y, Ishii S, Saito K, Kojima S, Sugiyama T, Ono T, Okano K, Yoshikawa Y, Aotsuka S, Sasaki N, Hattori A, Okumura K, Nagai K, Sugano S, Isogai T. Signal Sequence and Keyword Trap in silico for Selection of Full-Length Human cDNAs Encoding Secretion or Membrane Proteins from Oligo-Capped cDNA Libraries. DNA Res. 12: 117-126, 2005.
  14. Hayashi H, Matsuzaki O, Muramatsu S, Tsuchiya Y, Harada T, Suzuki Y, Sugano S, Matsuda A, Nishida E. Centaurin-alpha 1 is a PI3K dependent activator of ERK1/2 map kinases. J Biol Chem. 2005 Nov 14; [Epub ahead of print]
  15. Yamasaki C, Koyanagi KO, Fujii Y, Itoh T, Barrero R, Tamura T, Yamaguchi-Kabata Y, Tanino M, Takeda JI, Fukuchi S, Miyazaki S, Nomura N, Sugano S, Imanishi T, Gojobori T. Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB). Gene. 2005 Sep 23; [Epub ahead of print]
  16. Nakagawa T, Watanabe M, Ohashi E, Uyama R, Takauji S, Mochizuki M, Nishimura R, Ogawa H, Sugano S, Sasaki N. Cyclopedic protein expression analysis of cultured canine mammary gland adenocarcinoma cells from six tumours. Res Vet Sci. 2005 Sep 19; [Epub ahead of print]
  17. Nunomura K, Nagano K, Itagaki C, Taoka M, Okamura N, Yamauchi Y, Sugano S, Takahashi N, Izumi T, Isobe T. Cell surface labeling and mass spectrometry reveal diversity of cell-surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells. Mol Cell Proteomics. 2005 Sep 20; [Epub ahead of print]
2004
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J; MGC Project Team. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 14:2121-2127,2004.
  2. Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Kel AE, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Takagi T, Nakai K, Sugano S. Large-scale collection and characterization of promoters of human and mouse genes. In Silico Biol. 4(3):0036 [Epub ahead of print] 2004
  3. Noma T, Yoshizawa I, Sugano S, Ogawa N, Kawano Y. Somatropin promotes dermatophagoides farinae-specific IgE generation independently of IL-4 and IL-10. Asian Pac J Allergy Immunol. 22:133-142, 2004.
  4. Adachi S, Jigami T, Yasui T, Nakano T, Ohwada S, Omori Y, Sugano S, Ohkawara B, Shibuya H, Nakamura T, Akiyama T. Role of a BCL9-related beta-catenin-binding protein, B9L, in tumorigenesis induced by aberrant activation of Wnt signaling. Cancer Res. 64:8496-8501, 2004.
  5. Bajic VB, Tan SL, Suzuki Y, Sugano S. Promoter prediction analysis on the whole human genome. Nat Biotechnol. 22: 1467-1473, 2004
  6. Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Nakai K, Sugano S. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. Genome Res. 14:1711-1718, 2004.
  7. Niida A, Hiroko T, Kasai M, Furukawa Y, Nakamura Y, Suzuki Y, Sugano S, Akiyama T. DKK1, a negative regulator of Wnt signaling, is a target of the beta-catenin/TCF pathway. Oncogene. 23:8520-8526, 2004.
  8. Nonaka H, Sugano S, Miyajima A. Serial analysis of gene expression in sinusoidal endothelial cells from normal and injured mouse liver. Biochem Biophys Res Commun. 324: 15-24,2004.
  9. Oyama M, Itagaki C, Hata H, Suzuki Y, Izumi T, Natsume T, Isobe T, Sugano S. Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs. Genome Res. 10B: 2048-2052, 2004.
  10. Yamada S, Ohira M, Horie H, Ando K, Takayasu H, Suzuki Y, Sugano S, Hirata T, Goto T, Matsunaga T, Hiyama E, Hayashi Y, Ando H, Suita S, Kaneko M, Sasaki F, Hashizume K, Ohnuma N, Nakagawara A. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. Oncogene. 2004 23:5901-5911.
  11. Huang DY, Kuo YY, Lai JS, Suzuki Y, Sugano S, Chang ZF. GATA-1 and NF-Y cooperate to mediate erythroid-specific transcription of Gfi-1B gene. Nucleic Acids Res. 2004 32:3935-3946.
  12. Hashimoto SI, Suzuki Y, Kasai Y, Morohoshi K, Yamada T, Sese J, Morishita S, Sugano S, Matsushima K. 5'-end SAGE for the analysis of transcriptional start sites. Nat Biotechnol. 22: 1146-1149, 2004 Epub Aug 8
  13. Yu L, Frith MC, Suzuki Y, Peterfreund RA, Gearan T, Sugano S, Schwarzschild MA, Weng Z, Fink JS, Chen JF. Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses. Brain Res. 1000:156-173, 2004.
  14. Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda JI, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Md M, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, R Gopinath G, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, Sherry S, Shiba R, Shimizu N, Shimoyama M, Simpson AJ, Soares B, Steward C, Suwa M, Suzuki M, Takahashi A, Tamiya G, Tanaka H, Taylor T, Terwilliger JD, Unneberg P, Veeramachaneni V, Watanabe S, Wilming L, Yasuda N, Yoo HS, Stodolsky M, Makalowski W, Go M, Nakai K, Takagi T, Kanehisa M, Sakaki Y, Quackenbush J, Okazaki Y, Hayashizaki Y, Hide W, Chakraborty R, Nishikawa K, Sugawara H, Tateno Y, Chen Z, Oishi M, Tonellato P, Apweiler R, Okubo K, Wagner L, Wiemann S, Strausberg RL, Isogai T, Auffray C, Nomura N, Gojobori T, Sugano S. Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. PLoS Biol. 2004 Apr 20 [Epub ahead of print]
  15. Matsuzaki M, Misumi O, Shin-I T, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature. 428: 653-657, 2004.
  16. Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S. Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet. 36:40-45, 2004.
  17. Watanabe, J., Sasaki, M., Suzuki, Y. and Sugano, S. Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species. Nucleic Acids Res. 32: D334-338, 2004.
  18. Suzuki, Y., Yamashita, R., Sugano, S. and Nakai, K. DBTSS, DataBase of Transcriptional Start Sites: progress report 2004. Nucleic Acids Res. 32: D78-81, 2004.
  19. Scott A, Pantoja-Uceda D, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Sugano S, Yokoyama S, Guntert P. NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES. J Biomol NMR. 30:463-464, 2004.
2003
  1. Auffray C, Chen Z, Hood L, Soares B, Sugano S. Foreword: from the TRANSCRIPTOME conferences to the SYSTEMOSCOPE international consortium. C R Biol. 326:867-875, 2003.
  2. Yamashita R, Suzuki Y, Nakai K, Sugano S. Small open reading frames in 5' untranslated regions of mRnas. C R Biol. 326:987-991, 2003.
  3. Minamikawa-Tachino R, Kabuyama N, Gotoh T, Kagei S, Naruse M, Kisu Y, Togashi T, Sugano S, Usami H, Nomura N. High-throughput classification of images of cells transfected with cDNA clones. C R Biol. 326: 993-1001, 2003.
  4. Clark M. S., Edwards Y. J., Peterson D, Clifton S. W., Thompson A. J., Sasaki M., Suzuki Y., Kikuchi K., Watabe S., Kawakami K., Sugano S., Elgar G., Johnson S. L. Fugu ESTs: new resources for transcription analysis and genome annotation. Genome Res 13: 2747-2753, 2003.
  5. Ito Y, Oike Y, Yasunaga K, Hamada K, Miyata K, Matsumoto S, Sugano S, Tanihara H, Masuho Y, Suda T. Inhibition of angiogenesis and vascular leakiness by angiopoietin-related protein 4. Cancer Res. 63: 6651-6657, 2003.
  6. Ohira M, Morohashi A, Inuzuka H, Shishikura T, Kawamoto T, Kageyama H, Nakamura Y, Isogai E, Takayasu H, Sakiyama S, Suzuki Y, Sugano S, Goto T, Sato S, Nakagawara Expression profiling and characterization of 4200 genes cloned from primary neuroblastomas: identification of 305 genes differentially expressed between favorable and unfavorable subsets. Oncogene. 22:5525-5536. 2003
  7. Tsai CC, Chung YD, Lee HJ, Chang WH, Suzuku Y, Sugano S, Lin JY. Large-scale sequencing analysis of the full-length cDNA library of human hepatocellular carcinoma. J Biomed Sci 10: 636-643. 2003.
  8. Ohira M, Morohashi A, Nakamura Y, Isogai E, Furuya K, Hamano S, Machida T, Aoyama M, Fukumura M, Miyazaki K, Suzuki Y, Sugano S, Hirato J, Nakagawara A. Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma. Cancer Lett. 197: 63-8, 2003.
  9. Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashidume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y; Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science. 301: 376-379, 2003.
  10. Shibui-Nihei A, Ohmori Y, Yoshida K, Imai J, Oosuga I, Iidaka M, Suzuki Y, Mizushima-Sugano J, Yoshitomo-Nakagawa K, Sugano S. The 5' terminal oligopyrimidine tract of human elongation factor 1A-1 gene functions as a transcriptional initiator and produces a variable number of Us at the transcriptional level. Gene. 311: 137-45, 2003.
  11. Furukawa K, Horie M, Okutomi K, Sugano S, Furukawa K. Isolation and functional analysis of the melanoma specific promoter region of human GD3 synthase gene. Biochim Biophys Acta. 1627: 71-8, 2003.
  12. Arai M, Yokosuka O, Chiba T, Imazeki F, Kato M, Hashida J, Ueda Y, Sugano S, Hashimoto K, Saisho H, Takiguchi M, Seki N. Gene Expression Profiling Reveals the Mechanism and Pathophysiology of Mouse Liver Regeneration. J Biol Chem. 278: 29813-29818, 2003.
  13. Matsuda A, Suzuki Y, Honda G, Muramatsu S, Matsuzaki O, Nagano Y, Doi T, Shimotohno K, Harada T, Nishida E, Hayashi H, Sugano S. Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. Oncogene. 22: 3307-3318, 2003.
  14. Sakate R, Osada N, Hida M, Sugano S, Hayasaka I, Shimohira N, Yanagi S, Suto Y, Hashimoto K, Hirai M. Analysis of 5'-end sequences of chimpanzee cDNAs. Genome Res. 13: 1022-1026, 2003.
  15. Suzuki Y, Sugano S. Construction of a full-length enriched and a 5'-end enriched cDNA library using the oligo-capping method. Methods Mol Biol. 221: 73-91, 2003.
  16. Harada T, Matsuzaki O, Hayashi H, Sugano S, Matsuda A, Nishida E. AKRL1 and AKRL2 activate the JNK pathway. Genes Cells. 8: 493-500, 2003.
  17. Jin Y, Suzuki H, Maegawa S, Endo H, Sugano S, Hashimoto K, Yasuda K, Inoue K. A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG. EMBO J. 22: 905-912, 2003.
  18. Xie GX, Han X, Ito E, Yanagisawa Y, Maruyama K, Sugano S, Suzuki Y, Wang Y, Gabriel A, Stevens SK, Mitchell J, Sharma M, Palmer PP. Gene structure, dual-promoters and mRNA alternative splicing of the human and mouse regulator of G protein signaling GAIP/RGS19. J Mol Biol. 325: 721-732, 2003.
2002
  1. Osada N, Hida M, Kusuda J, Tanuma R, Hirata M, Suto Y, Hirai M, Terao K, Sugano S, Hashimoto K. Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence. BMC Genomics. 3: 36, 2002.
  2. Komatsu T, Suzuki Y, Imai J, Sugano S, Hida M, Tanigami A, Muroi S, Yamada Y, Hanaoka K. Molecular cloning, mRNA expression and chromosomal localization of mouse angiotensin-converting enzyme-related carboxypeptidase (mACE2). DNA Seq. 13:217-220. 2002.
  3. Shiroki K, Ohsawa C, Sugi N, Wakiyama M, Miura K, Watanabe M, Suzuki Y, Sugano S. Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event. Nucleic Acids Res30: 2851-2861. . 2002
  4. Takamatsu K, Maekawa K, Togashi T, Choi DK, Suzuki Y, Taylor TD, Toyoda A, Sugano S, Fujiyama A, Hattori M, Sakaki Y, Takeda T. Identification of two novel primate-specific genes in DSCR. DNA Res. 9: 89-97. 2002
  5. Ueda R. H, Chen W, Adachi A, Wakamatsu H, Hayashi S, Takasugi T, Nagano M, Nakahama K, Suzuki Y, Sugano S, Iino M, Shigeyoshi Y, Hashimoto S. A Transcription Factor Response Element for Gene Expression During Circadian Night. Nature 418: 534-539, 2002.
  6. Suzuki Y, Yamashita R, Nakai K, Sugano S. DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res. 30: 328-331, 2002.
  7. Osada N, Hida M, Kusuda J, Tanuma R, Hirata M, Hirai M, Terao K, Suzuki Y, Sugano S, Hashimoto K. Prediction of unidentified human genes on the basis of sequence similarity to novel cDNAs from cynomolgus monkey brain. Genome Biol. 3: RESEARCH0006, 2002.
  8. Nishikawa T, Ota T, Kawai Y, Ishii S, Saito K, Yamamoto J, Wakamatsu A, Ozawa M, Suzuki Y, Sugano S, Isogai T. Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries. In Silico Biol. 2: 5-18, 2002.
  9. Azuma T, Takei M, Yoshikawa T, Nagasugi Y, Kato M, Otsuka M, Shiraiwa H, Sugano S, Mitamura K, Sawada S, Masuho Y, Seki N. Identification of candidate genes for Sjogren's syndrome using MRL/lpr mouse model of Sjogren's syndrome and cDNA microarray analysis. Immunol Lett. 81: 171-176, 2002.
  10. Osada N, Kusuda J, Hirata M, Tanuma R, Hida M, Sugano S, Hirai M, Hashimoto K. Search for genes positively selected during primate evolution by 5'-end-sequence screening of cynomolgus monkey cDNAs. Genomics. 2002 79: 657-662, 2002.
  11. Omori Y, Imai J, Suzuki Y, Watanabe S, Tanigami A, Sugano S. OASIS is a transcriptional activator of CREB/ATF family with a transmembrane domain. Biochem Biophys Res Commun. 293: 470-477, 2002.
  12. Sugiyama T, Ishii S, Yamamoto J, Irie R, Saito K, Otuki T, Wakamatsu A, Suzuki Y, Hio Y, Ota T, Nishikawa T, Sugano S, Masuho Y, Isogai T. cDNA macroarray analysis of gene expression in synoviocytes stimulated with TNFalpha. FEBS Lett. 517: 121-128, 2002.
  13. Shiroki K, Ohsawa C, Sugi N, Wakiyama M, Miura K, Watanabe M, Suzuki Y, Sugano S. Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event. Nucleic Acids Res. 30: 2851-2861 2002.
  14. Watanabe J, Sasaki M, Suzuki Y, Sugano S. Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs. Gene. 2002 291: 105-113, 2002.
  15. Kato H, Tjernberg A, Zhang W, Krutchinsky AN, An W, Takeuchi T, Ohtsuki Y, Sugano S, Chait BT, Roeder RG. SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones. J Biol Chem. 277: 5498-5505, 2002.
2001
  1. Nishikawa T, Ota T, Kawai Y, Ishii S, Saito K, Yamamoto JI, Wakamatsu A, Ozawa M, Suzuki Y, Sugano S, Isocal T. Comparison of sequences of cDNA clones obtained from oligo-capping cDNA libraries with those from unigene. DNA Res. 8: 255-262, 2001.
  2. Akiyama, T., Gohda, J., Shibata, S., Nomura, Y., Azuma, S., Ohmori, Y., Sugano, S., Arai, H., Yamamoto, T., Inoue, J. Mammalian homologue of E. coli ras-like GTPase (ERA) is a possible apoptosis regulator with RNA binding activity. Gene to Cells 6: 987-1001, 2001.
  3. Kurotaki N, Harada N, Yoshiura K, Sugano S, Niikawa N, Matsumoto N. Molecular characterization of NSD1, a human homologue of the mouse Nsd1 gene. Gene. 279: 197-204, 2001.
  4. Kato M, Seki N, Sugano S, Hashimoto K, Masuho Y, Muramatsu Ma MA, Kaibuchi K, Nakafuku M. Identification of sonic hedgehog-responsive genes using cDNA microarray. Biochem Biophys Res Commun. 289: 472-478, 2001.
  5. Hida, M., Suzuki, Y., Sugano, S. Full-length cDNA libraries: Reagents for functional studies of the nervous system. In Method in genomic neuroscience. Edited by Chen, H. R. and Moldin, S. O. (CRC press FL). Pp207-227, 2001.
  6. Osada N, Hida M, Kususda J, Tanuma R, Iseki K, Hirata M, Suto Y, Hirai M, Terao K, Suzuki Y, Sugano S, Hashimoto K. Assignment of 118 novel cDNAs of cynomolgus monkey brain to human chromosomes. Gene. 275: 31-37, 2001.
  7. Date H, Onodera O, Tanaka H, Iwabuchi K, Uekawa K, Igarashi S, Koike R, Hiroi T, Yuasa T, Awaya Y, Sakai T, Takahashi T, Nagatomo H, Sekijima Y, Kawachi I, Takiyama Y, Nishizawa M, Fukuhara N, Saito K, Sugano S, Tsuji S. Early-onset ataxia with ocular motor apraxia and hypoalbuminemia is caused by mutations in a new HIT superfamily gene. Nature Genet. 29: 184-188, 2001.
  8. Nishimoto M, Fukushima A, Miyagi S, Suzuki Y, Sugano S, Matsuda Y, Hori Ta, Muramatsu M, Okuda A. Structural analyses of the utf1 gene encoding a transcriptional coactivator expressed in pluripotent embryonic stem cells. Biochem Biophys Res Commun. 285: 945-953, 2001.
  9. Suzuki Y, Sugano S. Construction of full-length-enriched cDNA libraries. The oligo-capping method. Methods Mol Biol. 175: 143-153, 2001.
  10. Yamaguchi R, Tanimoto N, Tateyama S, Uchida K, Hirano N, Tsuchiya K, Shimizu H, Sugano S. Immunohistochemical study of age-dependent brain lesions in mice infected intracerebrally with Kasba (Chuzan) virus. J Comp Pathol. 124: 36-45, 2001.
  11. Suzuki Y, Taira H, Tsunoda T, Mizushima-Sugano J, Sese J, Hata H, Ota T, Isogai T, Tanaka T, Morishita S, Okubo K, Sakaki Y, Nakamura Y, Suyama A, Sugano S. Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites. EMBO Rep. 2: 388-393, 2001.
  12. Suzuki Y, Tsunoda T, Sese J, Taira H, Mizushima-Sugano J, Hata H, Ota T, Isogai T, Tanaka T, Nakamura Y, Suyama A, Sakaki Y, Morishita S, Okubo K, Sugano S. Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res. 11: 677-684, 2001.
  13. Omori Y, Imai J, Watanabe M, Komatsu T, Suzuki Y, Kataoka K, Watanabe S, Tanigami A, Sugano S. CREB-H: a novel mammalian transcription factor belonging to the CREB/ATF family and functioning via the box-B element with a liver-specific expression. Nucleic Acids Res. 29: 2154-2162, 2001.
  14. Mikami I, Harada H, Nagai H, Tsuneizumi M, Nobe Y, Koizumi K, Sugano S, Tanaka S, Emi Down-regulation in multiple human cancers of a novel gene, DMHC, from 17q25.1 that encodes an integral membrane protein. Jpn J Cancer Res. 92: 417-422, 2001.
  15. Choi DK, Suzuki Y, Yoshimura S, Togashi T, Hida M, Taylor TD, Wang Y, Sugano S, Hattori M, Sakaki Y. Molecular cloning and characterization of a gene expressed in mouse developing tongue, mDscr5 gene, a homolog of human DSCR5 (Down syndrome Critical Region gene 5). Mamm Genome. 12: 347-351, 2001.
  16. Harada H, Nagai H, Tsuneizumi M, Mikami I, Sugano S, Emi M. Identification of DMC1, a novel gene in the TOC region on 17q25.1 that shows loss of expression in multiple human cancers. J Hum Genet. 46: 90-95, 2001.
  17. Shibui, A., Ohmori, Y., Suzuki, Y., Sasaki, M., Nogami, S., Sugano, S., Watanabe, J., Effect of DNA vaccine in murine malaria using a full-length cDNA library. Res. Commun. Mol. Path. And Pharmacology. 109: 147-157, 2001.
  18. Moria, S., Tanaka, K., Ohkuma, M., Sugano, S., Kudo, T. Diversification of the microtubule system in the early stage of eukaryote evolution: elongation factor 1 alpha and alpha-tubulin protein phylogeny of termite symbiotic oxymonad and hypermastigote protist. J. Mol. Evol. 52: 6-16, 2001
  19. Yudate, H. T., Suwa, M., Irie, R., Matsui, H., Nishikawa, T., Nakamura, Y., Yamaguchi, D., Peng, Z. Z., Yamamoto, T., Nagai, K., Hayashi, K., Otsuki, T., Sugiyama, T., Ota, T., Suzuki, Y., Sugano, S., Isogai, T., Masuho, Y. HUNT: launch of a full-length cDNA database from the helix research institute. Nucl. Acid Res. 29: 185-188, 2001.
  20. Watanabe, M., Sugano, S, Imai, J., Yoshida, K., Onodera, R., Amin, M. R., Uchida, K., Yamaguchi, R., Tateyama, S. Inhibition of cell proliferation, suppression of tumourigenecity, and induction of differentiation of the canine mammary tumour cell line by sodium phenylacetate. Res. Vet. Sci. 70: 27-32, 2001
  21. Watanabe, J., Sasaki, M., Suzuki Y., Sugano S. FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum. Nucl. Acid Res. 29: 70-71, 2001.
2000
  1. Yamaguchi, R., Tottori, J., Uchida, K., Tateyama, S., Sugano, S. Importance of Escherichia coli infection in ascites in broiler chickens shown by experimental production. Avian Diseases 44: 545-548, 2000
  2. Takasaki J., Kamohara M., Matsumoto M., Saito T., Sugimoto T., Ohishi T., Ishii H., Ota T., Nishikawa T., Kawai Y., Masuho Y., Isogai T., Suzuki Y., Sugano S., Furuichi K. Related The molecular characterization and tissue distribution of the human cysteinyl leukotriene CysLT(2) receptor. Biochem Biophys Res Commun. 274: 316-322, 2000.
  3. Campbell H. D., Kamei M., Claudianos C., Woollatt E., Sutherland G. R., Suzuki Y., Hida M., Sugano S., Young I. G. Human and mouse homologues of the drosophila melanogaster tweety (tty) gene: A novel gene family encoding predicted transmembrane proteins. Genomics. 68: 89-92, 2000.
  4. Davuluri R. V., Suzuki Y., Sugano S., Zhang M. Q. CART classification of human 5' UTR sequences. Genome Res. 10: 1807-1816, 2000.
  5. Ohira M., Shishikura T., Kawamoto T., Inuzuka H., Morohashi A., Takayasu H., Kageyama H., Takada N., Takahashi M., Sakiyama S., Suzuki Y., Sugano S., Kuma H., Nozawa I., Nakagawara A. Hunting the subset-specific genes of neuroblastoma: Expression profiling and differential screening of the full-length-enriched oligo-capping cDNA libraries. Med Pediatr Oncol. 35: 547-549, 2000.
  6. Kawamoto T., Shishikura T., Ohira M., Takayasu H., Morohashi A., Takada N., Takahashi M., Suzuki Y., Sugano S., Hori T., Nakagawara A. Association between favorable neuroblastoma and high expression of the novel metalloproteinase gene, nbla3145/XCE, cloned by differential screening of the full-length-enriched oligo-capping neuroblastoma cDNA libraries. Med Pediatr Oncol. 35: 628-631, 2000.
  7. Osada, N., Kusuda, J., Suzuki, Y., Sugano, S., Hashimoto, K. Sequnce analysis, gene expression, and chromosomal assignment of mouse Borg4 gene and its human orthologue. J. Hum. Genet. 45: 374-377, 2000
  8. Yoshikawa, T., Nagasugi, Y., Azuma, T., Kato, M., Sugano, S., Hashimoto, K., Masuho, Y., Muramatsu, M., Seki, N. Isolation of novel mouse genes differentially expressed in brain using cDNA microarray. Biochemical and Biophysical Research Communications. 275: 532-537, 2000.
  9. Yang, Z-Q., Imoto, I., Fukuda, Y., Pimkhaokham, A., Shimada, Y., Imamura, M., Sugano, S., Nakamura, Y., Inazawa, J. Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal cancer cell lines. Cancer Research. 60: 4735-4739, 2000.
  10. Watanabe, M., Yoshida, K., Hida, M., Kato, H., Uchida, K., Yamaguchi, R., Tateyama, S., Sugano, S. Cloning, expression analysis and chromosomal mapping of GTPBP2, a novel member of the G protein family. Gene 256: 51-58, 2000.
  11. Watanabe, M., Tateyama, S., Togashi, T., Uchida, K., Yamaguchi, R., Shimizu, T., Sugano, S. Identification of canine ?-lactalbumin. J Vet. Med. Sci. 62: 1217-1219, 2000.
  12. Akashi, H., Han, H.-J., Iizaka, M., Nakajima, Y., Furukawa, Y., Sugano, S., Imai, K., Nakamura, Y. Isolation and characterization of a human cDNA encoding a protein hohologous to the 7.2-kDa protein (subunit X) of bovine ubiquinol-cyctochrome C reductase. J. Hum. Genet. 45: 43-46, 2000
  13. Akashi, H., Han, H.-J., Iizawa, M., Nakajima, Y., Furukawa, Y., Sugano, S., Imai, K, Nakamura, Y. Isolation and characterization of a novel gene encoding a putative seven-span transmembrane protein, TM7SF3. Cytogenet. Cell Genet. 88: 305-309, 2000.
  14. Iizawa, M., Han, H.-J., Furukawa, Y., Nakajima, Y., Sugano, S., Ogawa, M., Nakamura, Y. Isolation and chromosomal assignment of a novel human gene, CORO1C, homologous to coronin-like actin-binding proteins. Cytogenet. Cell Genet. 88: 221-224, 2000.
  15. Ohmori, Y., Tanigami, A., Sugano., S Comparative PCR: A Simple and Sensitive Method to Quantify Low-Abundant mRNA Species. Genomics. 67: 140-145, 2000.
  16. Watanabe, M., Sugano, S., Togashi, T., Imai, J., Uchida, K., Yamaguchi, R., Tateyama, S. Molecular cloning and phylogenetic analysis of canine ?-casein. DNA sequence 11: 295-300, 2000.
  17. Togashi, T., Choi, D.-K., Taylor, T. D., Suzuki, Y., Sugano, S., Hattori, M., Sakaki, Y. A novel gene, DSR1, from the distal Down syndrome critical region on chromosome 21q22.2. DNA Res. 7: 207-212, 2000
  18. Suzuki, Y., Ishihara, D., Sasaki, M., Nakagawa, H., Hata, H., Tsunoda, T., Watanabe, M., Komatsu, T., Ota, T., Isogai, T., Suyama, A., Sugano, S., Statistical analysis of 5' untranslated region of human mRNA using "Oligo-capping" cDNA libraries. Genomis 64: 286-297, 2000.
1999
  1. Takada T, Yoshida K, Nakamura K, Nakao K, Tsujimoto G, Katsuki M, Sugano S. Expression of green fluorescent protein in transgenic mice. Methods Enzymol. 302: 233-50, 1999.
  2. Xie, G. X., Ito, E., Maruyama, K., Suzuki, Y., Sugano, S., Sharma, M., Pietruck, C., Palmer, P. P. The promoter region of human prepro-nociceptin gene and its regulation by cyclic AMP and steroid hormones. Gene 238: 427-436, 1999
  3. Kim, M., Tezuka, T., Suzuki, Y., Sugano, S., Hirai, M., Yamamoto, T. Molecular cloning and characterization of a novel Cbl-family gene, cbl-c. Gene 139: 145-154, 1999.
  4. Yoshida, K., Watanabe, M., Kato, H., Dutta, A., and Sugano, S. BH-protocadherin-c, a member of the cadherin superfamily, interacts with protein phosphatase 1 alpha through its intracellular domain. FEBS lett. 460: 93-98, 1999
  5. Yoshida K., Sugano, S., Identification of a novel protocadherin gene on human region in Xq21.3 Genomics 62: 540-543, 1999
  6. Imai, J., Watanabe, M., Sasaki, M., Yamaguchi, R., Tateyama, S., Sugano, S. Elevated expression of c-met proto-oncogene at metastasized site. Clin. Exp. Metastasis 17: 457-462, 1999
  7. Seki, N., Hattori, A., Hayashi, A., Kozuma, S., Sasaki, M., Suzuki, Y., Sugano, S., Muramatsu, M., Saito, T., Cloning and expression profile of mouse and human genes, Rnf11/RNF11, a novel RING-H2 finger protein. Biochem. Biophy. Acta 1489: 421-427, 1999
  8. Seki, N., Hayashi, A., Hattori, A., Kozuma, S., Sasaki, M., Suzuki, Y., Sugano, S., Muramatsu, M., Saito, T., cDNA cloning, tissue expression, and chromosomal assigment of a mouse gene, encoding a 127 kDa UV-damaged DNA binding protein which is defective in XPE cells. DNA Res. 6: 319-322, 1999
  9. Xin, X., Yu, Y. -S., Tsung, H. C., Sugano, S., Yan, Y. C. The developmental fate of green fluorescent mouse embryonic germ cells in chimeric embryos. Cell Res. 9: 201-208, 1999.
  10. Chen, Z., Sugano, S., Watanabe, S. A 189-bp repeat region in the human cytomegalovirus replication origin contains essential and supporting sequences. Virology 258: 240-248, 1999.
  11. Shibui, A., Tsunoda, T., Seki, N., Suzuki Y., Sugano, S., Sugane, K. Cloning, expression analysis and chromosomal localization of a novel butyrophilin like receptor. J. Hum. Genet. 44: 249-252, 1999
  12. Shibui, A., Tsunoda, T., Seki, N., Suzuki Y., Sugane, K., Sugano, S. Isolation and chromosomal mapping of human homolog of intestinal Na+/PO4 cotransporter. J. Hum. Genet. 44: 190-192, 1999
  13. Ito, E., Yanagisawa, Y., Iwahashi, Y., Suzuki, Y., Nagasaki, H., Akiyama, Y., Sugano, S., Yuasa, Y., Maruyama, K. A core promoter and a frequent single-nucleotide polymorphism of the mismatch repair gene hMLH1. Biochem. Biophys. Res. Comm. 256: 488-494, 1999.
  14. Tasaki, Y., Fukuda, S., Iio, M., Miura, R., Imai, T., Sugano, S., Yoshie, O., Hughes, A. L., Nomiyama, H. Chemokine PARC gene (SCY18) generated by fusion of two MIP-1?/LD78?-like genes. Genomics 55: 353-357, 1999.
  15. Ito, E., Iwahashi, Y., Yanagisawa, Y., Suzuki, Y., Sugano, S., Yuasa, Y., Maruyama, K. Two short sequences have positive effects on the human p27 kip1 gene transcription, Gene 228: 93-100, 1999.
  16. Seki, N., Hattori, A., Sugano, S., Suzuki, Y., Nakagawara, A., Muramatsu, M., Hori, T., Saito, T. A novel human gene whose product shares significant homology with the bovine brain-specific protein p25 on chromosome 5p15.3. J. Hum. Genet. 44: 121-122, 1999.
  17. Takada, T., Yoshida, K., Nakamura, K., Nakao, K., Tsujimoto, G., Katsuki, M., Sugano, S. Expression of Green Fluorescent Protein in Transgenic Mice. Methods in Enzymology 302: 233-250, 1999.
  18. Yoshida, K., Hida, M., Watanabe, M., Yamaguchi, R., Tateyama, S., Sugano, S. cDNA cloning and chromosomal mapping of mouse BH-protocadherin. DNA sequence 10: 43-47, 1999.
  19. Yoshida, K., Hida, M., Watanabe, M., Yamaguchi, R., Tateyama, S., Sugano, S. cDNA cloning and chromosomal mapping of mouse BH-protocadherin. DNA sequence 10: 43-47, 1999.